This page contains updated data regarding recent segmental duplications in the Rat Build 31. It focuses on genomic duplications >5000bp and >90% identity. For questions contact Eray Tuzun
UW Duplication BrowserUCSC Rat Genome Browser with additional duplication-related data. (Also available in UCSC Web Browser June 2003 Rat Genome Browser)
Data Access
UCSC Genome BrowserThis allows you to browse the genome.
Parasight Views showing Inter & Intra DuplicationInter and Intra chromosome duplications from the perspective of individual scaffolds. The assembly duplications (red and blue for inter and intra scaffold respectively) are shown at various length thresholds.
Length CutsAnalysis on various breakdowns of Duplication Lengths.
Percent Similarity CutsAnalysis on various breakdowns of Percent Similarity.
StatisticsAnalysis on various KB-Group Breakdowns
Non-redundant Duplication RatiosAnalysis on various breakdowns of Percent Similarity.
Chromosome by Chromosome Duplication RatiosAnalysis on Duplication Ratios by chromosome
Length vs IdentityLength vs Identity scatter plot.
Kimura vs IdentityKimura vs Identity scatter plot.
Summary of Duplication Hits to RefGene DatabaseSummary of Duplication Hits to Rat mRNA Database
Summary of Duplication Hits to Nonredundant Rat mRNA Database(Excluding RefSeqGenes)
Chr by Chr Pairwise Alignment Statistics
Coordinates of non-overlapping regions with alignments(>90% identity and >250bp, nontrimmed)
Statistics of non-overlapping regions with alignments(>90% identity and >250bp, nontrimmed)
High Copy Repeat Candidates