Chromosome Name Type TOTSEQ Overlapping Sequence Total Sequence OverlapWithRandom TotalSequence With Random Duplication Ratio Duplication Percentage
chr1 ALL OVERLAP 9395929 TOTSEQ 268121971 9692207 272009188 0.03563191 3.563191035 100
chr1 INTRA OVERLAP 8395813 TOTSEQ 268121971 8432610 272009188 0.031001195 3.100119544
chr1 INTER OVERLAP 4491077 TOTSEQ 268121971 4787355 272009188 0.017599975 1.759997534
chr1_random ALL OVERLAP 296278 TOTSEQ 3887217 1026719 114620569
chr1_random INTRA OVERLAP 36797 TOTSEQ 3887217 598207 114620569
chr1_random INTER OVERLAP 296278 TOTSEQ 3887217 465309 114620569
chr10 ALL OVERLAP 730441 TOTSEQ 110733352 935420 111604134 0.008381589 0.838158916
chr10 INTRA OVERLAP 561410 TOTSEQ 110733352 561410 111604134 0.005030369 0.503036922
chr10 INTER OVERLAP 169031 TOTSEQ 110733352 374010 111604134 0.00335122 0.335121995
chr10_random ALL OVERLAP 204979 TOTSEQ 870782 465009 88671163
chr10_random INTRA OVERLAP 0 TOTSEQ 870782 155572 88671163
chr10_random INTER OVERLAP 204979 TOTSEQ 870782 309437 88671163
chr11 ALL OVERLAP 260030 TOTSEQ 87800381 296674 89078995 0.00333046 0.333045967
chr11 INTRA OVERLAP 155572 TOTSEQ 87800381 155572 89078995 0.00174645 0.174644988
chr11 INTER OVERLAP 104458 TOTSEQ 87800381 141102 89078995 0.00158401 0.158400979
chr11_random ALL OVERLAP 36644 TOTSEQ 1278614 2047948 47927840
chr11_random INTRA OVERLAP 0 TOTSEQ 1278614 1786872 47927840
chr11_random INTER OVERLAP 36644 TOTSEQ 1278614 714362 47927840
chr12 ALL OVERLAP 2011304 TOTSEQ 46649226 2097166 47602367 0.044055918 4.405591848
chr12 INTRA OVERLAP 1786872 TOTSEQ 46649226 1786872 47602367 0.037537461 3.753746111
chr12 INTER OVERLAP 677718 TOTSEQ 46649226 763580 47602367 0.016040799 1.604079898
chr12_random ALL OVERLAP 85862 TOTSEQ 953141 418896 112302099
chr12_random INTRA OVERLAP 0 TOTSEQ 953141 197001 112302099
chr12_random INTER OVERLAP 85862 TOTSEQ 953141 221895 112302099
chr13 ALL OVERLAP 333034 TOTSEQ 111348958 361703 111957306 0.003230723 0.323072261
chr13 INTRA OVERLAP 197001 TOTSEQ 111348958 197001 111957306 0.001759608 0.175960826
chr13 INTER OVERLAP 136033 TOTSEQ 111348958 164702 111957306 0.001471114 0.147111435
chr13_random ALL OVERLAP 28669 TOTSEQ 608348 1905973 112829030
chr13_random INTRA OVERLAP 0 TOTSEQ 608348 1302252 112829030
chr13_random INTER OVERLAP 28669 TOTSEQ 608348 1182540 112829030
chr14 ALL OVERLAP 1877304 TOTSEQ 112220682 2087378 114045777 0.018302984 1.830298372
chr14 INTRA OVERLAP 1302252 TOTSEQ 112220682 1302252 114045777 0.011418678 1.141867796
chr14 INTER OVERLAP 1153871 TOTSEQ 112220682 1363945 114045777 0.011959627 1.19596274
chr14_random ALL OVERLAP 210074 TOTSEQ 1825095 4690984 111599721
chr14_random INTRA OVERLAP 0 TOTSEQ 1825095 4214530 111599721
chr14_random INTER OVERLAP 210074 TOTSEQ 1825095 1762538 111599721
chr15 ALL OVERLAP 4480910 TOTSEQ 109774626 4655274 111384261 0.04179472 4.179471999
chr15 INTRA OVERLAP 4214530 TOTSEQ 109774626 4214530 111384261 0.037837752 3.78377516
chr15 INTER OVERLAP 1552464 TOTSEQ 109774626 1726828 111384261 0.015503339 1.550333938
chr15_random ALL OVERLAP 174364 TOTSEQ 1609635 2115902 91834454
chr15_random INTRA OVERLAP 0 TOTSEQ 1609635 981783 91834454
chr15_random INTER OVERLAP 174364 TOTSEQ 1609635 1523811 91834454
chr16 ALL OVERLAP 1941538 TOTSEQ 90224819 1970487 91624926 0.021506015 2.150601464
chr16 INTRA OVERLAP 981783 TOTSEQ 90224819 981783 91624926 0.010715239 1.071523921
chr16 INTER OVERLAP 1349447 TOTSEQ 90224819 1378396 91624926 0.015043898 1.504389755
chr16_random ALL OVERLAP 28949 TOTSEQ 1400107 1702537 98707303
chr16_random INTRA OVERLAP 0 TOTSEQ 1400107 1514960 98707303
chr16_random INTER OVERLAP 28949 TOTSEQ 1400107 187577 98707303
chr17 ALL OVERLAP 1673588 TOTSEQ 97307196 1707171 97923085 0.017433795 1.743379511
chr17 INTRA OVERLAP 1514960 TOTSEQ 97307196 1514960 97923085 0.015470918 1.547091781
chr17 INTER OVERLAP 158628 TOTSEQ 97307196 192211 97923085 0.001962877 0.196287729
chr17_random ALL OVERLAP 33583 TOTSEQ 615889 206855 87954433
chr17_random INTRA OVERLAP 0 TOTSEQ 615889 0 87954433
chr17_random INTER OVERLAP 33583 TOTSEQ 615889 206855 87954433
chr18 ALL OVERLAP 173272 TOTSEQ 87338544 179606 87933069 0.002042531 0.204253078
chr18 INTRA OVERLAP 0 TOTSEQ 87338544 0 87933069 0 0
chr18 INTER OVERLAP 173272 TOTSEQ 87338544 179606 87933069 0.002042531 0.204253078
chr18_random ALL OVERLAP 6334 TOTSEQ 594525 1084642 59818050
chr18_random INTRA OVERLAP 0 TOTSEQ 594525 842983 59818050
chr18_random INTER OVERLAP 6334 TOTSEQ 594525 863821 59818050
chr19 ALL OVERLAP 1078308 TOTSEQ 59223525 1078308 60207641 0.01790982 1.790981979
chr19 INTRA OVERLAP 842983 TOTSEQ 59223525 842983 60207641 0.014001263 1.400126273
chr19 INTER OVERLAP 857487 TOTSEQ 59223525 857487 60207641 0.014242162 1.424216239
chr19_random ALL OVERLAP 0 TOTSEQ 984116 3432158 259206263
chr19_random INTRA OVERLAP 0 TOTSEQ 984116 2881969 259206263
chr19_random INTER OVERLAP 0 TOTSEQ 984116 1301702 259206263
chr2 ALL OVERLAP 3432158 TOTSEQ 258222147 3519449 262563998 0.013404157 1.34041568
chr2 INTRA OVERLAP 2881969 TOTSEQ 258222147 2881969 262563998 0.010976253 1.097625349
chr2 INTER OVERLAP 1301702 TOTSEQ 258222147 1388993 262563998 0.005290112 0.529011217
chr2_random ALL OVERLAP 87291 TOTSEQ 4341851 1158747 59638830
chr2_random INTRA OVERLAP 0 TOTSEQ 4341851 912883 59638830
chr2_random INTER OVERLAP 87291 TOTSEQ 4341851 361194 59638830
chr20 ALL OVERLAP 1071456 TOTSEQ 55296979 1148967 55901907 0.02055327 2.055327021
chr20 INTRA OVERLAP 912883 TOTSEQ 55296979 912883 55901907 0.016330087 1.633008691
chr20 INTER OVERLAP 273903 TOTSEQ 55296979 351414 55901907 0.006286261 0.62862614
chr20_random ALL OVERLAP 77511 TOTSEQ 604928 2345841 171574299
chr20_random INTRA OVERLAP 0 TOTSEQ 604928 2003493 171574299
chr20_random INTER OVERLAP 77511 TOTSEQ 604928 936694 171574299
chr3 ALL OVERLAP 2268330 TOTSEQ 170969371 2365399 172693734 0.013697075 1.369707485
chr3 INTRA OVERLAP 2003493 TOTSEQ 170969371 2003493 172693734 0.011601423 1.160142267
chr3 INTER OVERLAP 859183 TOTSEQ 170969371 956252 172693734 0.005537271 0.553727097
chr3_random ALL OVERLAP 97069 TOTSEQ 1724363 2871128 189095492
chr3_random INTRA OVERLAP 0 TOTSEQ 1724363 2119986 189095492
chr3_random INTER OVERLAP 97069 TOTSEQ 1724363 810717 189095492
chr4 ALL OVERLAP 2774059 TOTSEQ 187371129 2868332 189495785 0.015136653 1.51366533
chr4 INTRA OVERLAP 2119986 TOTSEQ 187371129 2119986 189495785 0.01118751 1.118751005
chr4 INTER OVERLAP 713648 TOTSEQ 187371129 807921 189495785 0.00426353 0.426353019
chr4_random ALL OVERLAP 94273 TOTSEQ 2124656 2060055 175231360
chr4_random INTRA OVERLAP 0 TOTSEQ 2124656 1396623 175231360
chr4_random INTER OVERLAP 94273 TOTSEQ 2124656 682657 175231360
chr5 ALL OVERLAP 1965782 TOTSEQ 173106704 2226253 175251811 0.012703167 1.270316687
chr5 INTRA OVERLAP 1396623 TOTSEQ 173106704 1396623 175251811 0.007969236 0.796923576
chr5 INTER OVERLAP 588384 TOTSEQ 173106704 848855 175251811 0.00484363 0.48436304
chr5_random ALL OVERLAP 260471 TOTSEQ 2145107 2005679 149787913
chr5_random INTRA OVERLAP 0 TOTSEQ 2145107 1603707 149787913
chr5_random INTER OVERLAP 260471 TOTSEQ 2145107 881174 149787913
chr6 ALL OVERLAP 1745208 TOTSEQ 147642806 1889434 149413340 0.012645685 1.264568478
chr6 INTRA OVERLAP 1603707 TOTSEQ 147642806 1603707 149413340 0.010733359 1.073335888
chr6 INTER OVERLAP 620703 TOTSEQ 147642806 764929 149413340 0.00511955 0.511954957
chr6_random ALL OVERLAP 144226 TOTSEQ 1770534 5276762 144853502
chr6_random INTRA OVERLAP 0 TOTSEQ 1770534 4646898 144853502
chr6_random INTER OVERLAP 144226 TOTSEQ 1770534 928423 144853502
chr7 ALL OVERLAP 5132536 TOTSEQ 143082968 5213397 144258073 0.036139378 3.613937779
chr7 INTRA OVERLAP 4646898 TOTSEQ 143082968 4646898 144258073 0.032212395 3.22123948
chr7 INTER OVERLAP 784197 TOTSEQ 143082968 865058 144258073 0.0059966 0.599660027
chr7_random ALL OVERLAP 80861 TOTSEQ 1175105 1866409 130236651
chr7_random INTRA OVERLAP 0 TOTSEQ 1175105 1454891 130236651
chr7_random INTER OVERLAP 80861 TOTSEQ 1175105 588194 130236651
chr8 ALL OVERLAP 1785548 TOTSEQ 129061546 1811932 129948633 0.013943448 1.394344795
chr8 INTRA OVERLAP 1454891 TOTSEQ 129061546 1454891 129948633 0.011195893 1.119589307
chr8 INTER OVERLAP 507333 TOTSEQ 129061546 533717 129948633 0.004107138 0.410713824
chr8_random ALL OVERLAP 26384 TOTSEQ 887087 1691794 114537030
chr8_random INTRA OVERLAP 0 TOTSEQ 887087 1240127 114537030
chr8_random INTER OVERLAP 26384 TOTSEQ 887087 966397 114537030
chr9 ALL OVERLAP 1665410 TOTSEQ 113649943 1665410 114816246 0.014505003 1.450500306
chr9 INTRA OVERLAP 1240127 TOTSEQ 113649943 1240127 114816246 0.010800971 1.080097149
chr9 INTER OVERLAP 940013 TOTSEQ 113649943 940013 114816246 0.008187108 0.818710795
chr9_random ALL OVERLAP 0 TOTSEQ 1166303 31393788 76989068
chr9_random INTRA OVERLAP 0 TOTSEQ 1166303 27950745 76989068
chr9_random INTER OVERLAP 0 TOTSEQ 1166303 25725036 76989068
chrUn ALL OVERLAP 31393788 TOTSEQ 75822765 34101242 82684831 0.412424402 41.24244022
chrUn INTRA OVERLAP 27950745 TOTSEQ 75822765 29371518 82684831 0.355222568 35.5222568
chrUn INTER OVERLAP 25725036 TOTSEQ 75822765 28427169 82684831 0.343801501 34.38015009
chrUn_random ALL OVERLAP 2707454 TOTSEQ 6862066 3693459 167637646
chrUn_random INTRA OVERLAP 1420773 TOTSEQ 6862066 2095271 167637646
chrUn_random INTER OVERLAP 2702133 TOTSEQ 6862066 3052278 167637646
chrX ALL OVERLAP 986005 TOTSEQ 160775580 1016588 162753318 0.006246189 0.624618909
chrX INTRA OVERLAP 674498 TOTSEQ 160775580 674498 162753318 0.004144296 0.414429646
chrX INTER OVERLAP 350145 TOTSEQ 160775580 380728 162753318 0.002339295 0.233929486
chrX_random ALL OVERLAP 30583 TOTSEQ 1977738 30583 1977738
chrX_random INTRA OVERLAP 0 TOTSEQ 1977738 0 1977738
chrX_random INTER OVERLAP 30583 TOTSEQ 1977738 30583 1977738